PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA109G00007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 701aa    MW: 77014.9 Da    PI: 5.6796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA109G00007genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.82.7e-20551647295
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                  +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ l +ed  ++r+W++++++  ++ks++y+l+ ++ +Fvk ngL+egDf+v++  ++ ++++++
  AA109G00007 551 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISLAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVKTNGLQEGDFIVIY--SDvKCGKYL 645
                  79*************************999999********7778*******99777777777777.********************..555999887 PP

                  EE CS
           B3  94 vk 95 
                  ++
  AA109G00007 646 IR 647
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-28545661IPR015300DNA-binding pseudobarrel domain
CDDcd100152.27E-38548649No hitNo description
SuperFamilySSF1019362.75E-22549643IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-19550652IPR003340B3 DNA binding domain
PROSITE profilePS5086310.602550652IPR003340B3 DNA binding domain
PfamPF023623.0E-16551646IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKTLHVAAAH GGDLAGRTAA AEEEDAVVMM EQVGREIWLG HENGEDDDSS LFYGDLPNLP  60
DFPCMSSSSS SSTSPAPVNA IVSSASSSST AASSSSSSAA SWAVLKSDGE DPTQYGSRNC  120
DSSADVVVPA LQSTASMEIQ GFGGDGGGDC MDMMETFGYM DLLDGTDFFD TSAIFSQEDD  180
NQNANLMEQT LETTQQQQQL PIQVTNNGGV VEEDMQMNSS LEQDEDLATV FLEWLKTNKE  240
SVSAEDLRKV KIKKATIESA ARRLGGGKEA MKQLLKLILE WVQTNHLQRR RNNGGNLPYP  300
LQQSYQDPFT SQADQTWPPP PPLPPQPQAQ APPAFVSDPG FTYMAAAQNY PPQDYLPLLE  360
SPPSWAATPP PQFPMAAAAN SHYNPFQEPT SFTGYNMNPY SSYPPYLPGQ MRDQRLLRLC  420
SSATKEARKK RMARQRRFLS HHHRHNTTSS TNNNNQQSQN QMLEHARVGE SCGNVVATQL  480
NQVAAGAASG GTWMYWPNVP ANVAPPGSAQ MESQLPNMDR TASVSAMTRQ QVVPDRRQGW  540
KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISLAME DIGTSRVWNM  600
RYRFWPNNKS RMYLLENTGD FVKTNGLQEG DFIVIYSDVK CGKYLIRGVK VRQPAGTQKQ  660
TEAPTSSAAA KRQSKSQRNN INHNSPSANM MMAAPTTQAV K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_189108.10.0B3 domain-containing transcription factor ABI3
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLA0A087HCD20.0A0A087HCD2_ARAAL; Uncharacterized protein
STRINGAT3G24650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.10.0B3 family protein